Discord.js Token Not Working with .env

I was following a tutorial on securing my token with a .env file and putting my token in the file. I put the token in correctly and referenced it in my code correctly. The issue I am facing is that it only works when I run it within the editor. When I try and run the code through the .run link it it comes out with an error regarding the token. The following is the error I am getting:

Error [TOKEN_INVALID]: An invalid token was provided.
at Client.login (/home/runner/emhhf5cptch/node_modules/discord.js/src/client/Client.js:204:52)
at /home/runner/emhhf5cptch/index.js:125:8
at Script.runInContext (vm.js:131:20)
at Object. (/run_dir/interp.js:156:20)
at Module._compile (internal/modules/cjs/loader.js:1133:30)
at Object.Module._extensions..js (internal/modules/cjs/loader.js:1153:10)
at Module.load (internal/modules/cjs/loader.js:977:32)
at Function.Module._load (internal/modules/cjs/loader.js:877:14)
at Function.executeUserEntryPoint [as runMain] (internal/modules/run_main.js:74:12)
at internal/main/run_main_module.js:18:47 {
[Symbol(code)]: 'TOKEN_INVALID'
}

I don't understand how the code can be working fine within the editor but when I try and run it with the .run link, it doesn't work. Any help to solve this issue would be greatly appreciated.

The only resolution I can come up with is that for some reason, the code is not able to see the .env file because I am not logged in. I'm not sure how to fix this.